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	<title>bomb.bio | Bradley Stevenson | Activity</title>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/page/2/#post-9389</link>
				<pubDate>Mon, 18 May 2020 01:53:17 +1200</pubDate>

									<content:encoded><![CDATA[<p>p.s. You can change the name of this thread/channel if you want to too!</p>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/page/2/#post-9388</link>
				<pubDate>Mon, 18 May 2020 01:52:17 +1200</pubDate>

									<content:encoded><![CDATA[<p>Hi everyone,  sorry for the silence. We have essentially moved over to the bomb.bio protocol, no NaCl in our bead prep (just Sera-mag carboxy beads in TE), getting rid of our salt-containing wash step, and using 90 uL of beads. I will get some details and add our information to the database. Also, we just went ahead and engaged the magnet the&hellip;<span class="activity-read-more" id="activity-read-more-4667"><a href="https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/page/2/#post-9388" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-9273</link>
				<pubDate>Tue, 07 Apr 2020 03:35:42 +1200</pubDate>

									<content:encoded><![CDATA[<p>Just an update, Emily Junkins ran both the Hillbilly protocol and the BOMB.bio protocol in parallel today on the same samples. She was able to detect positive and negative samples with 100% accuracy. Both extractions came up with similar extraction efficiencies but we will compare the data and re-run in the near future. Also, I successfully set up&hellip;<span class="activity-read-more" id="activity-read-more-4528"><a href="https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-9273" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-9264</link>
				<pubDate>Mon, 06 Apr 2020 03:59:12 +1200</pubDate>

									<content:encoded><![CDATA[<p>BTW, I cannot wait to solve important problems with open science, let&#8217;s rip this s*** open and get important science done.</p>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-9263</link>
				<pubDate>Mon, 06 Apr 2020 03:55:26 +1200</pubDate>

									<content:encoded><![CDATA[<p>Hey Phil,</p>
<p>Thanks for your input and your great protocol. We have essentially arrived at what you outline in your protocol but are awaiting results (from actual patient samples). One thing that we have seen that matters is the use of carrier RNA. Our choice has been hybridoma cells that are available where we are (IMMY, immy.com), but we will need&hellip;<span class="activity-read-more" id="activity-read-more-4522"><a href="https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-9263" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic  in the forum Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community</title>
				<link>https://bomb.bio/forums/reply/8992/#post-8996</link>
				<pubDate>Wed, 01 Apr 2020 14:48:12 +1200</pubDate>

									<content:encoded><![CDATA[<p>Hey Rob,</p>
<p>Thanks for the link. I wondered how a lysis step that makes the viral RNA available for amplification would not be inactivating the same virus. I suspect that high titers are to blame. I had originally thought we would use a heated incubation of the lysis step until our colleagues got positive results without it. I think I am adding it&hellip;<span class="activity-read-more" id="activity-read-more-4487"><a href="https://bomb.bio/forums/reply/8992/#post-8996" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic  in the forum Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community</title>
				<link>https://bomb.bio/forums/reply/8992/#post-8994</link>
				<pubDate>Wed, 01 Apr 2020 04:44:16 +1200</pubDate>

									<content:encoded><![CDATA[<p>Hey, just FYI. This protocol (with a few minor edits) worked. We ran it using some human hybridoma cells spiked with synthetic RNA specific for the N1 and N2 primers in the CDC test kit. Next, we will run it with samples from both positive and negative tests that the same facility has tested with commercially available kits. If we can get 100%&hellip;<span class="activity-read-more" id="activity-read-more-4483"><a href="https://bomb.bio/forums/reply/8992/#post-8994" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic Hillbilly Bead Viral RNA Extraction Protocol - BOMB Community in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-8992</link>
				<pubDate>Tue, 31 Mar 2020 17:05:06 +1200</pubDate>

									<content:encoded><![CDATA[<p>My colleagues have been successful in recovering viral RNA from the transport media using the following protocol and Qiagen RNEasy columns. We are starting there and trying to simply replace the filter cartridge with steps using carboxylated GE Healthcare Speedbeads. We are assuming that binding will be same (unknown) in the lysis and binding&hellip;<span class="activity-read-more" id="activity-read-more-4481"><a href="https://bomb.bio/forums/topic/hillbilly-bead-viral-rna-extraction-protocol-bomb-community/#post-8992" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson replied to the topic Adjusting BOMB protocol # 8.2 for SARS-CoV-2 extraction in the forum COVID-19</title>
				<link>https://bomb.bio/forums/topic/adjusting-bomb-protocol-8-2-for-sars-cov-2-extraction/#post-8989</link>
				<pubDate>Mon, 30 Mar 2020 03:46:57 +1200</pubDate>

									<content:encoded><![CDATA[<p>This protocol seems very useful for my desire to develop an open source, do-it-yourself, protocol for extracting COVID-19 viral RNA from samples. Every time another commercial kit is approved, it is backordered for an unknown amount of time. I am a University professor who is shut out of his own lab that happens to know the CEO of a local biotech&hellip;<span class="activity-read-more" id="activity-read-more-4474"><a href="https://bomb.bio/forums/topic/adjusting-bomb-protocol-8-2-for-sars-cov-2-extraction/#post-8989" rel="nofollow ugc">Read more</a></span></p>
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				<title>Bradley Stevenson became a registered member</title>
				<link>https://bomb.bio/activity/p/114/</link>
				<pubDate>Thu, 13 Sep 2018 19:29:08 +1200</pubDate>

				
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